Displaying posts tagged with

“Software”

Operating systems and sandwiches

Ubuntu Linux: “You can have your sandwich any way you like, but recently we started wrapping it in this really ugly wrapper. Still yummy though, and you can ask for a different wrapper. But you have to ask”. Mac OSX: “We only serve ham & cheese on white bread. If you don’t like it, go [...]

Bio-Linux. Now available in the Cloud

For some time now, NERC has been providing us with Bio-Linux. If you don’t want to be bothered with installing all the essential bioinformatic software for your Ubuntu box, you can install Bio-Linux, either as a a Linux distro for installation from scratch, or as a set of packages for an already existing Debian or Ubuntu [...]

Closing gaps

Geek alert: this post for coders. So you sequenced your genome, reached an optimally small number of contigs, they look sane, and now you would like to see what you need for the finishing stage. Namely, how many gaps you have and what are their sizes. UPDATE: “might just be worth clarifying this is for [...]

Android apps for scientists

A few science apps for the Android mobile phone operating system. Some of these I have, some I don’t , and some I really would like to check out. Feel free to add more that you know of in the comment section. Better yet, make a wish… Science Literature: AgileMedSearch: Searching through pubmed databases. Pretty [...]

Absolut standards: report from the M3-2009 meeting, part 2: signature genes and big science

Some more presentations from the metagenomics, metadata, and metaanalysis (M3) meeting, Stockholm June 27, 2009 Pathway Signature Genes Lucas A. Brouwers, Martijn A. Huynen and Bas E. Dutilh CMBI / NCMLS, Radboud University Nijmegen Medical Centre, The Netherlands If we take a sample of soil, how can we know whether it is adequate for growing [...]

Test driving the Wolfram Alpha

There has been a lot of buzz recently about Wolfram’s new product, the Wolfram Alpha (WA). After attending a webinar on WA, I was given a preview account, and started messing around with it.  In case you were wondering, that is the extent of my involvement with Wolfram Research, LLC, I don’t even have a [...]