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Health

Friday bits and pieces: ebola, old software patches, microscopy and microbiomes

  Scammers are cashing in on the ebola scare. The news media is cashing in on the ebola scare. Politicians are cashing in on the ebola scare. Unfortunately, neither international healthcare nor biomedical research  are cashing in on the ebola scare.   I found the first software patch. Seems pretty robust.   Diet can influence certain autoimmune […]

Sequencing the frog that can save lives

TL; DR:  The genome sequence of the North American Wood Frog will tell us a lot about the genetic control of freezing and reanimating whole organisms. My friend and colleague, Dr. Andor Kiss is crowdfunding this project. If you would like to help, please go to experiment.com. You will get acknowledged by name in the paper. To […]

Data of thousands of ALS patients made available for analysis

This came up in my inbox. An interesting and welcome initiative, making thousands of ALS patients’ medical data available for analysis. It doesn’t seem to have any sequence data (so not a bioinformatic database), but there are heaps of biomedical data in which to sink your statistical teeth. Dear All, My name is Hagit Alon […]

Your Genome, Yourself?

We have Palaeolithic emotions, medieval institutions and God-like technologies. E.O. Wilson   Whole genome sequencing will soon be cheap enough to be widely affordable. We are nearing the time when omics data may be retained for patients on a wide basis. These may include full exome, haplotype, full genome sequencing, tissue level transcriptomic data, microbiome […]

For Ada Lovelace Day: Florence Nightingale

Note: a repost of a 2010 post I published for Ada Lovelace day. Unfortunately, I am too busy these days to write a new one. “Ada Lovelace Day is celebrated today to “…raise the profile of women in science, technology, engineering and maths.” So without further ado: She is a ‘ministering angel’ without any exaggeration […]

New Links between Bacteria and Cancer

Microbiology and Cancer Cancer and microbiology have been closely linked for over 100 years. Cancer patients are usually immunosuppressed due to chemotherapy, requiring special treatment and conditions to prevent bacterial infection. Bladder cancer is typically treated with inactivated tuberculosis bacteria to induce an inflammatory response which turns against remaining cancer cells, with remarkably effective results.  Also, viruses are […]

SCOTUS: DNA is information, not a chemical

Should DNA be subject to copyright law, rather than patent law? Section 101 of Title 35 U.S.C. sets out the subject matter that can be patented: Whoever invents or discovers any new and useful process, machine, manufacture, or composition of matter, or any new and useful improvement thereof, may obtain a patent therefor, subject to the […]

Postdocs in Genome-Scale Proteomics, Imaging-based Screening and Cancer Biology

  Three postdocs positions available at a great lab in Denmark. Read on:   We are seeking three Postdoctoral Fellows to The Cellular Signal Integration Group (C-SIG). The group is a network biology research group located at the Department of Systems Biology at the Technical University of Denmark (DTU). Our department represents one of the […]

The Inside Poop

It’s pretty much common knowledge that mother’s milk is the healthiest food for infants, and that it bestows health benefits upon mother and baby that formula feeding cannot match. The unique combination of lipids, sugars, proteins and antibodies is not even close to being rivaled by baby formula manufacturers. With few exceptions, such as when […]

Gut microbes and diabetes

It seems that every day we are discovering more about the role of microbes to our health. We really have to revise our definition of what a human (or any other animal or plant) is: we are not just a creatures of 10,000,000,000,000 cells containing the DNA we got from mother and father. We have […]

Open Cancer Research

  “We seek to download from the amazing successes of the computer industry two principles: that of open source, and that of crowdsourcing; to quickly, responsibly accelerate the delivery of targeted therapeutics to cancer patients. Our business model involves all of you. This research is funded by the public.”  

Funny Science Friday: The IgNobels, Wall Street Journal

The IgNobel prizes were awarded this week. Yes, the Nobel prizes too, but the IgNobels are the really interesting ones. (For an thoughtful piece about why the Nobel Prizes in the sciences do not enhance or may even hurt scientific recognition, read Carl Zimmer’s piece at The Loom) . The IgNobel prizes are awarded annually for […]

Probably a good time to talk about pancreatic cancer

  Percent of pancreatic cancer patients diagnosed when the disease is still localized: 8 Their 5-year relative survival: 21.5% Percent of pancreatic cancer patients diagnosed when the disease has metastasized: 53 Their 5-year relative survival: 1.8% Mean survival rate after diagnosis: < 1 year Ranking in cause of cancer-related deaths worldwide: 4 Number of effective […]

Ratting out landmines and tuberculosis

  Thanks to John Stevenson for drawing my attention to this one: Giant African Pouched Rats are trained as detectors; a good solution for low-income countries and communities. HeroRATS, as they are called, come in two “models”: landmine detectors and tuberculosis detectors. Rats born in captivity (captured rats are impossible to train) are trained to […]

Humans draw the LINE at Gonorrhea. Not that it helps.

א וַיְדַבֵּר יְהוָה, אֶל-מֹשֶׁה וְאֶל-אַהֲרֹן לֵאמֹר.  ב דַּבְּרוּ אֶל-בְּנֵי יִשְׂרָאֵל, וַאֲמַרְתֶּם אֲלֵהֶם:  אִישׁ אִישׁ, כִּי יִהְיֶה זָב מִבְּשָׂרוֹ–זוֹבוֹ, טָמֵא הוּא.  ג וְזֹאת תִּהְיֶה טֻמְאָתוֹ, בְּזוֹבוֹ:  רָר בְּשָׂרוֹ אֶת-זוֹבוֹ, אוֹ-הֶחְתִּים בְּשָׂרוֹ מִזּוֹבוֹ–טֻמְאָתוֹ, הִוא.  ד כָּל-הַמִּשְׁכָּב, אֲשֶׁר יִשְׁכַּב עָלָיו הַזָּב–יִטְמָא; וְכָל-הַכְּלִי אֲשֶׁר-יֵשֵׁב עָלָיו, יִטְמָא. , The day after Valentine’s Day. Ah! What better day in the year can we find […]