Displaying the most recent of 472 posts written by

Iddo

Save time, vote for me

  3quarksdaily are running their annual competition for best science blog entry. There are 87 really great blog posts competing there for the votes of  3QD readers. But who has the time to read through all of them? So let me make it easy for you: vote for me. This blog’s “Dead Salmon” blog post has […]

Free science books!

  The National Academies Press are offering all their books in PDF format for free. The announcement yesterday created a serious traffic surge on their site. But the books are still there, and are still free. Got to buy that new 5Tb external disk now….

Grant Opportunities from Agilent

  Two funding opportunities, available worldwide. Read below and visit  www.Agilent.com/lifesciences/emerginginsights for more details and application forms.   Agilent’s eMerging Insights Grant Program Fostering integrated, whole-systems approaches to biological research with two $75K grants for open source data-integration tool development The different omics platforms—genomics, transcriptomics, proteomics and metabolomics—are generating new insights into how biological systems […]

In defense of ‘prokaryotes’

Fine, I get it. “Prokaryotes” is a wrong taxonomic term. It’s wrong to lump bacteria and archaea together. That would be like saying “eutoichic” to lump all bacteria, archaea, plants and fungi together because they have cell walls. (“τοίχος” =wall in Greek. My Google Translate-foo is STRONG!)  Still, there are so many things in common among […]

Music Monday: the Grand Rapids Lipdub

5,000 people in Grand Rapids Michigan USA were involved in this project. From the YouTube Comments: The Grand Rapids LipDub Video was filmed May 22nd, with 5,000 people, and involved a major shutdown of downtown Grand Rapids, which was filled with marching bands, parades, weddings, motorcades, bridges on fire, and helicopter take offs. It is […]

Quick Fix: ssh timeouts

  It is very annoying when you leave an ssh window open to your server with something running, go to lunch, come back to see this: Read from remote host my.stupid.server.uni.edu: Connection reset by peer. Connection to my.stupid.server.uni.edu closed.   So here are two fixes. The first is server side. ssh to your server, and […]

Psychedelic Monday: Half Full Glass of Wine

Tame Impala

Crowdsourcing genomics

  Miami University has  joined the National Genomics Research Initiative (NGRI) offered by HHMI Science Education Alliance (SEA) in their Phage Genomics course. The students go directly into the lab, participating in an authentic research experience. In a full-year academic course they: isolate and characterize bacterial viruses from their local soil prepare the viral DNA […]

Psychedelic Monday: Sploosh!

Music: Ozric Tentacles. Featuring marine life. Mix by Bonci. Highlights: 0:33 Dolphin chasing ring bubble 2:02 Humpback(?) tailfin 2:58 Whale shark swimming with dolphins 3:44 & 4:07 Humpback baleen-syncing 4:11 Manta Ray 5:58 Human and dolphin kiss

Bio-Linux. Now available in the Cloud

For some time now, NERC has been providing us with Bio-Linux. If you don’t want to be bothered with installing all the essential bioinformatic software for your Ubuntu box, you can install Bio-Linux, either as a a Linux distro for installation from scratch, or as a set of packages for an already existing Debian or Ubuntu […]

Psychedelic Monday: Interstellar Overdrive

Pink Floyd, with Syd Barrett.

Psychedelic Monday: White Rabbit

The classic from Jefferson Airplane.

Social media used to track disease outbreak

  There are some interesting developments regarding the February outbreak of Legionelliosis which was traced to the Playboy mansion. Reminder: over 120 delegates of the DOMAINFest in Santa Monica, California came down with symptoms of a respiratory illness. The convention included a trip to the Playboy mansion, which later was suspected as the outbreak source. […]

Shakespeare’s Birthday and Evolution

William Shakespeare was baptized April 26, 1564. His birthday is traditionally commemorated on April 23 (incidentally, that is also the date of his death, in 1616). One interesting connection between Shakespeare and evolution was made by Richard Dawkins in his book The Blind Watchmaker: I am talking about the Weasel program. Weasel is an elegant illustration of the […]

What I learned from teaching a seminar class

I have been teaching a seminar course this semester, and through coaching students I think I learned more about what makes a good presentation than by reading “5 useful tips” type of articles or attending any number of  “Improve Your Speaking Skills” classes. By coaching and watching students give research seminars I became acutely aware […]