Automated Function Prediction: Submit your abstracts by Saturday

You have until Friday Saturday, April 20th to submit your abstracts to the Automated Function Prediction meeting, an ISMB 2013 Special Interest Group and CAFA: Critical Assessment of Function Annotations.

Keynote speakers:

  • Patricia Babbitt, University of California, San Francisco. Protein similarity networks: Identification of functional trends from the context of sequence similarity
  • Alex Bateman, European Bioinformatics Institute Using protein domains and families for functional prediction
  • Anna Tramontano, “La Sapienza” University, Rome. TBA


Key dates:

  • April 20, 2013: Deadline for submitting extended abstracts posters & talks
  • May 9, 2013: Notifications for accepted abstracts e-mailed to corresponding authors
  • May 16, 2013: Deadline for presenters to confirm acceptance of invitation to speak.
  • July 20, 2013: AFP SIG preceding ISMB/ECCB 2013, Berlin.

Sequence and structure genomics have generated a wealth of data, but extracting meaningful information from genomic information is becoming an increasingly difficult challenge. Both the number and the diversity of discovered sequences are increasing, and the fraction of genes whose function is known is decreasing. In addition, there is a need for annotation which is standardized so that it could be incorporated into function annotation on a large scale. Finally, there is a need to assess the quality of the available function predictionsoftware.

For these reasons and many more, automated protein function prediction is rapidly gaining interest among computational biologists in academia and industry.

The Automated Function Prediction Special Interest Group (AFP SIG) has been part of ISMB since 2005. We call upon all researchers involved in gene and protein functionprediction and annotation, both computational and experimental, to submit an abstract to the AFP meeting. Authors of select abstracts will be invited to give a talk and/or present a poster.

We will also be discussing the upcoming second Critical Assessment of Function Annotations, or CAFA 2. CAFA 1 was a highly successful experiment, engaging 30 groups worldwide, and has resulted in 16 peer-reviewed papers in Nature Methods and BMC Bioinformatics.

We are looking forward to a new and expanded CAFA 2 in 2013-2014, which will include a cellular component prediction track, and a human-specific track.

For further instructions on AFP 2013, please go here:

Please submit your abstract now, we are looking forward to seeing you in Berlin.

For continuing information, please subscribe to the following Google Group:!forum/afp-cafa



  • Iddo Friedberg, Miami University, Oxford, OH USA
  • Sean Mooney, Buck Institute for Aging Research, CA USA
  • Predrag Radivojac, Indian University, Bloomington IN, USA

Steering committee:

  • Steven Brenner, University of California, Berkeley, USA
  • Patricia Babbitt, University of California, San Francisco, USA
  • Christine Orengo, University College London, UK
  • Burkhard Rost, Technical University Munich, Germany

Program committee:

  • Mark Wass, Kent University, UK (chair)
  • Iddo Friedberg, Miami University, OH, USA (co-chair)
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