A problem I encountered now, when revising a paper and adding a supplement per the editor’s request. How do I number my tables and figures as Table S1, S2 etc.? A solution was provided in Stackexchange, but the syntax was not good for my version of LaTeX, and I don’t like \makeatletter (here’s why). Here [...]
So I’ve been catching up on my paper reviewing duties this weekend. To those outside the Ivory Outhouse, “reviewing a paper” means “anonymously criticizing a research article considered for publication in a scientific journal”. (For those of you familiar with the process, you can jump to the text after the first figure.) Here’s how science [...]
I finished reading Wool / Omnibus a few days ago. If you want one captivating book (or rather pentalogy) to read by the end of the year, then this is it. The five books grew from a short story, Wool, published electronically. The author, Hugh Howey, continued to publish Wool 2-5, and then compiled all [...]
Today is the last day of Open Access Week, where all things Open Access are heralded. William Gunn gave a great talk here at MU on how open access is changing scholarship. (And a big thank you to our librarians Jen Waller & Kevin Messner for hosting William!) I have posted about Open Access before, [...]
Let’s get this clear: Tyrannosaurus rex, the best selling figurine of class reptilia is not my favorite bad-ass top-of-the-food chain predator. Come on. Did you see its arms? I mean… As a kid, I always thought the Allosaurus was much cooler. For one thing, it was on the cover of my favorite dinosaur book, “The [...]
Quite a bit has been written about how the journal impact factor (JIF) is a bad metric. The JIF is supposed to measure a journal’s impact using a formula that normalizes the number of cited articles in a given time frame (typically a year). It is calculated exclusively by Thomson-Reuters, and is trademarked by this [...]
This tweet from Neil Degrasse Tyson jolted me from a pleasant rest before tomorrow’s race: …which led to the (in)famous Scopes Trial. On May 5, 1925 John Scopes was charged and subsequently tried, found guilty, and fined $100 for teaching Evolution, a violation of Tennessee’s Butler Act. The trial became a battleground for science [...]
Found this in my inbox: Dear Dr.Iddo Friedberg, Greeting from OMICS Group! I came across your contribution entitled “Biopython: freely available Python tools for computational molecular biology and bioinformatics” published in the Journal of Bioinformatics and thought your expertise would be an excellent fit for Toxicology-2012 Conference that OMICS Group is hosting. I’m just wondering how many legitimate calls for [...]
Great meeting: Biocuration 2012, Georgetown University, DC. When I leave a meeting with my head exploding with new ideas and a need to try them all out at once, I know I got my money’s worth, and then some. Even a three hour flight delay followed by discovering my car with a dead battery [...]
I just received an email from Julian Gough , one of last year’s CAFA participants. He started a Wikipedia initiative on protein function prediction, which are barely stubs at the moment. EDIT: He alerted me to the fact that protein function prediction has virtually no presence on Wikipedia. So all you protein function predictors out there, please contribute. Yes, [...]
It is with no inconsiderable degree of reluctance that I decline the offer of any Paper from you. I think, however, you will upon reconsideration of the subject be of opinion that I have no other alternative. The subjects you propose for a series of Mathematical and Metaphysical Essays are so very profound, that there [...]
Hats off to Jonathan Eisen for hosting this activity on his blog. (I’ll keep mine on, thank you. It’s raining cats and dogs here right now). A couple of weeks ago I posted a discussion about two papers that challenged the ortholog conjecture. Briefly, both papers stated that orthologs may not be such great [...]
The manuscripts I review invariably fall into four categories: 1. This is crap. (Rare). 2. This is terrific. (Even rarer). 3. This can be OK, but they really need to fix A, B & C. (fairly common). 4. If I only knew what they meant in point A, I could say whether they need to fix A, [...]
The AFP/CAFA 2011 meeting was held on July 15 and July 16. Yes, it was a huge success, and I’m not just saying that beacuse I am one of the organizers. I will write up something more comprehensive soon; in the meantime, here are my tweets from the meeting. I am learning a lot about [...]
I have recently been invited to Google+, (thanks Ruchira!) and as social timesucks go, it is quite enjoyable. Here are my first impressions about g+. In a nutshell: g+’s attempt at compartmentalized communication is laudable, but falls short of the mark. Mainly because, no social network can emulate the real-life way we communicate (or not) with [...]
